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Try mine out. I ran it perfectly, 180+ and 0 with grade 5 gear, besides the 6 beam charger for finishing your first 44/48 mission.
Actually the moment I hit 44, I set it to do this and came back to where swtor froze because it didnt accept the reward after the first with the beam charger.
I equipped the beam and the rest was gravy.
I stopped watching it but I do believe it gets all the bonus besides blowing the flagship command tower, not enough time. i think you need around 28-36 missiles for them.
In regards to different character ships, it may be. These runs I've been doing were with an Inquisitor/Sorc and Warrior/Juggernaut, both in the Fury ship.
But as long as the event is later then a bad load, it should still work fine.